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HS.FHIR.DTL.vR4.Model.Element.SubstanceNucleicAcid.subunit

class HS.FHIR.DTL.vR4.Model.Element.SubstanceNucleicAcid.subunit extends HS.FHIR.DTL.vR4.Model.Base.BackboneElement

Subunits are listed in order of decreasing length; sequences of the same length will be ordered by molecular weight; subunits that have identical sequences will be repeated multiple times.

Property Inventory

Parameters

parameter ELEMENTQUALIFIED = 1;
Inherited description: ELEMENTQUALIFIED controls the format of exported XML. The ELEMENTQUALIFIED specification should be based on the elementFormDefault attribute of the schema that defines the type. To maintain compatibility, ELEMENTQUALIFIED will default to 1 (true) for literal format export and will default to 0 (false) for encoded or encoded12 format export. These were the values always previously assumed for the elementFormDefault attribute.

NOTE: Direct use of XMLExport method does not support the ELEMENTQUALIFIED. The export must be done using %XML.Writer or SOAP support.

parameter XMLNAME = SubstanceNucleicAcid.subunit;
Inherited description: This parameter provides the default XMLNAME for the class. If it is empty then the class name will be used to construct a default XML name. The default XMLNAME is used as the top level tag when exporting objects and the export context did not provide an XML container name.
parameter XMLPROJECTION = ELEMENT;
parameter XMLSEQUENCE = 1;
Inherited description: If the XMLSEQUENCE = 1, then the order of the XML elements must match the order of the class properties. This allows us to deal with XML where the same field appears multiple times and is distinguished by the order.
parameter XMLTYPE = SubstanceNucleicAcid.subunit;
Inherited description: This parameter provides the default XMLTYPE for the class. If it is empty then the class name will be used to construct a default XML type.

The default XMLTYPE is used when naming and referencing this type in a schema and the schema context did not provide an XML type name.

Properties

property fivePrime as HS.FHIR.DTL.vR4.Model.Datatype.CodeableConcept (XMLNAME = "fivePrime", XMLPROJECTION = "ELEMENT");
CodeableConcept

The nucleotide present at the 5? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.

any FHIR4 code from any ValueSet may be used.

Property methods: fivePrimeGet(), fivePrimeGetSwizzled(), fivePrimeIsValid(), fivePrimeNewObject(), fivePrimeSet()
property length as %Integer (XMLNAME = "length", XMLPROJECTION = "ATTRIBUTE");
integer

The length of the sequence shall be captured.

Property methods: lengthDisplayToLogical(), lengthGet(), lengthIsValid(), lengthLogicalToDisplay(), lengthNormalize(), lengthSet(), lengthXSDToLogical()
property linkage as list of HS.FHIR.DTL.vR4.Model.Element.SubstanceNucleicAcid.subunit.linkage (XMLNAME = "linkage", XMLPROJECTION = "ELEMENT");
BackboneElement

The linkages between sugar residues will also be captured.

Property methods: linkageBuildValueArray(), linkageCollectionToDisplay(), linkageCollectionToOdbc(), linkageDisplayToCollection(), linkageGet(), linkageGetObject(), linkageGetObjectId(), linkageGetSwizzled(), linkageIsValid(), linkageOdbcToCollection(), linkageSet(), linkageSetObject(), linkageSetObjectId()
property sequence as %String (MAXLEN = 1000000, XMLNAME = "sequence", XMLPROJECTION = "ATTRIBUTE");
string

Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.

Property methods: sequenceDisplayToLogical(), sequenceGet(), sequenceIsValid(), sequenceLogicalToDisplay(), sequenceLogicalToOdbc(), sequenceNormalize(), sequenceSet()
property sequenceAttachment as HS.FHIR.DTL.vR4.Model.Datatype.Attachment (XMLNAME = "sequenceAttachment", XMLPROJECTION = "ELEMENT");
Attachment

(TBC)

Property methods: sequenceAttachmentGet(), sequenceAttachmentGetSwizzled(), sequenceAttachmentIsValid(), sequenceAttachmentNewObject(), sequenceAttachmentSet()
property subunit as %Integer (XMLNAME = "subunit", XMLPROJECTION = "ATTRIBUTE");
integer

Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

Property methods: subunitDisplayToLogical(), subunitGet(), subunitIsValid(), subunitLogicalToDisplay(), subunitNormalize(), subunitSet(), subunitXSDToLogical()
property sugar as list of HS.FHIR.DTL.vR4.Model.Element.SubstanceNucleicAcid.subunit.sugar (XMLNAME = "sugar", XMLPROJECTION = "ELEMENT");
BackboneElement

5.3.6.8.1 Sugar ID (Mandatory)

Property methods: sugarBuildValueArray(), sugarCollectionToDisplay(), sugarCollectionToOdbc(), sugarDisplayToCollection(), sugarGet(), sugarGetObject(), sugarGetObjectId(), sugarGetSwizzled(), sugarIsValid(), sugarOdbcToCollection(), sugarSet(), sugarSetObject(), sugarSetObjectId()
property threePrime as HS.FHIR.DTL.vR4.Model.Datatype.CodeableConcept (XMLNAME = "threePrime", XMLPROJECTION = "ELEMENT");
CodeableConcept

The nucleotide present at the 3? terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5? prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.

any FHIR4 code from any ValueSet may be used.

Property methods: threePrimeGet(), threePrimeGetSwizzled(), threePrimeIsValid(), threePrimeNewObject(), threePrimeSet()

Inherited Members

Inherited Properties

Inherited Methods

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