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HS.FHIR.DTL.vR4.Model.Element.MolecularSequence.referenceSeq

class HS.FHIR.DTL.vR4.Model.Element.MolecularSequence.referenceSeq extends HS.FHIR.DTL.vR4.Model.Base.BackboneElement

A sequence used as reference.

Property Inventory

Parameters

parameter ELEMENTQUALIFIED = 1;
Inherited description: ELEMENTQUALIFIED controls the format of exported XML. The ELEMENTQUALIFIED specification should be based on the elementFormDefault attribute of the schema that defines the type. To maintain compatibility, ELEMENTQUALIFIED will default to 1 (true) for literal format export and will default to 0 (false) for encoded or encoded12 format export. These were the values always previously assumed for the elementFormDefault attribute.

NOTE: Direct use of XMLExport method does not support the ELEMENTQUALIFIED. The export must be done using %XML.Writer or SOAP support.

parameter XMLNAME = MolecularSequence.referenceSeq;
Inherited description: This parameter provides the default XMLNAME for the class. If it is empty then the class name will be used to construct a default XML name. The default XMLNAME is used as the top level tag when exporting objects and the export context did not provide an XML container name.
parameter XMLPROJECTION = ELEMENT;
parameter XMLSEQUENCE = 1;
Inherited description: If the XMLSEQUENCE = 1, then the order of the XML elements must match the order of the class properties. This allows us to deal with XML where the same field appears multiple times and is distinguished by the order.
parameter XMLTYPE = MolecularSequence.referenceSeq;
Inherited description: This parameter provides the default XMLTYPE for the class. If it is empty then the class name will be used to construct a default XML type.

The default XMLTYPE is used when naming and referencing this type in a schema and the schema context did not provide an XML type name.

Properties

property chromosome as HS.FHIR.DTL.vR4.Model.Datatype.CodeableConcept (XMLNAME = "chromosome", XMLPROJECTION = "ELEMENT");
CodeableConcept

Chromosome containing genetic finding.

any FHIR4 code may be used; chromosome-human shows EXAMPLE codes, but you may use codes from any ValueSet.

Property methods: chromosomeGet(), chromosomeGetSwizzled(), chromosomeIsValid(), chromosomeNewObject(), chromosomeSet()
property genomeBuild as %String (MAXLEN = 1000000, XMLNAME = "genomeBuild", XMLPROJECTION = "ATTRIBUTE");
string

The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'

Property methods: genomeBuildDisplayToLogical(), genomeBuildGet(), genomeBuildIsValid(), genomeBuildLogicalToDisplay(), genomeBuildLogicalToOdbc(), genomeBuildNormalize(), genomeBuildSet()
property orientation as %String (MAXLEN = 1000000, XMLNAME = "orientation", XMLPROJECTION = "ATTRIBUTE");
code

sense | antisense

orientation-type|4.0.1 is the REQUIRED FHIR4 ValueSet for codes; you may NOT extend orientation-type|4.0.1 and you may NOT use codes from other ValueSets.

Property methods: orientationDisplayToLogical(), orientationGet(), orientationIsValid(), orientationLogicalToDisplay(), orientationLogicalToOdbc(), orientationNormalize(), orientationSet()
property referenceSeqId as HS.FHIR.DTL.vR4.Model.Datatype.CodeableConcept (XMLNAME = "referenceSeqId", XMLPROJECTION = "ELEMENT");
CodeableConcept

Reference identifier.

any FHIR4 code may be used; sequence-referenceSeq shows EXAMPLE codes, but you may use codes from any ValueSet.

Property methods: referenceSeqIdGet(), referenceSeqIdGetSwizzled(), referenceSeqIdIsValid(), referenceSeqIdNewObject(), referenceSeqIdSet()
property referenceSeqPointer as HS.FHIR.DTL.vR4.Model.Base.Reference (XMLNAME = "referenceSeqPointer", XMLPROJECTION = "ELEMENT");
Reference

A pointer to another MolecularSequence entity as reference sequence.

MolecularSequence

Property methods: referenceSeqPointerGet(), referenceSeqPointerGetSwizzled(), referenceSeqPointerIsValid(), referenceSeqPointerNewObject(), referenceSeqPointerSet()
property referenceSeqString as %String (MAXLEN = 1000000, XMLNAME = "referenceSeqString", XMLPROJECTION = "ATTRIBUTE");
string

A string to represent reference sequence.

Property methods: referenceSeqStringDisplayToLogical(), referenceSeqStringGet(), referenceSeqStringIsValid(), referenceSeqStringLogicalToDisplay(), referenceSeqStringLogicalToOdbc(), referenceSeqStringNormalize(), referenceSeqStringSet()
property strand as %String (MAXLEN = 1000000, XMLNAME = "strand", XMLPROJECTION = "ATTRIBUTE");
code

watson | crick

strand-type|4.0.1 is the REQUIRED FHIR4 ValueSet for codes; you may NOT extend strand-type|4.0.1 and you may NOT use codes from other ValueSets.

Property methods: strandDisplayToLogical(), strandGet(), strandIsValid(), strandLogicalToDisplay(), strandLogicalToOdbc(), strandNormalize(), strandSet()
property windowEnd as %Integer (XMLNAME = "windowEnd", XMLPROJECTION = "ATTRIBUTE");
integer

End position of the window on the reference sequence.

Property methods: windowEndDisplayToLogical(), windowEndGet(), windowEndIsValid(), windowEndLogicalToDisplay(), windowEndNormalize(), windowEndSet(), windowEndXSDToLogical()
property windowStart as %Integer (XMLNAME = "windowStart", XMLPROJECTION = "ATTRIBUTE");
integer

Start position of the window on the reference sequence.

Property methods: windowStartDisplayToLogical(), windowStartGet(), windowStartIsValid(), windowStartLogicalToDisplay(), windowStartNormalize(), windowStartSet(), windowStartXSDToLogical()

Inherited Members

Inherited Properties

Inherited Methods

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