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HS.FHIR.DTL.vR4.Model.Element.SubstanceProtein.subunit

class HS.FHIR.DTL.vR4.Model.Element.SubstanceProtein.subunit extends HS.FHIR.DTL.vR4.Model.Base.BackboneElement

This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times.

Property Inventory

Parameters

parameter ELEMENTQUALIFIED = 1;
Inherited description: ELEMENTQUALIFIED controls the format of exported XML. The ELEMENTQUALIFIED specification should be based on the elementFormDefault attribute of the schema that defines the type. To maintain compatibility, ELEMENTQUALIFIED will default to 1 (true) for literal format export and will default to 0 (false) for encoded or encoded12 format export. These were the values always previously assumed for the elementFormDefault attribute.

NOTE: Direct use of XMLExport method does not support the ELEMENTQUALIFIED. The export must be done using %XML.Writer or SOAP support.

parameter XMLNAME = SubstanceProtein.subunit;
Inherited description: This parameter provides the default XMLNAME for the class. If it is empty then the class name will be used to construct a default XML name. The default XMLNAME is used as the top level tag when exporting objects and the export context did not provide an XML container name.
parameter XMLPROJECTION = ELEMENT;
parameter XMLSEQUENCE = 1;
Inherited description: If the XMLSEQUENCE = 1, then the order of the XML elements must match the order of the class properties. This allows us to deal with XML where the same field appears multiple times and is distinguished by the order.
parameter XMLTYPE = SubstanceProtein.subunit;
Inherited description: This parameter provides the default XMLTYPE for the class. If it is empty then the class name will be used to construct a default XML type.

The default XMLTYPE is used when naming and referencing this type in a schema and the schema context did not provide an XML type name.

Properties

property cTerminalModification as %String (MAXLEN = 1000000, XMLNAME = "cTerminalModification", XMLPROJECTION = "ATTRIBUTE");
string

The modification at the C-terminal shall be specified.

Property methods: cTerminalModificationDisplayToLogical(), cTerminalModificationGet(), cTerminalModificationIsValid(), cTerminalModificationLogicalToDisplay(), cTerminalModificationLogicalToOdbc(), cTerminalModificationNormalize(), cTerminalModificationSet()
property cTerminalModificationId as HS.FHIR.DTL.vR4.Model.Datatype.Identifier (XMLNAME = "cTerminalModificationId", XMLPROJECTION = "ELEMENT");
Identifier

Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.

Property methods: cTerminalModificationIdGet(), cTerminalModificationIdGetSwizzled(), cTerminalModificationIdIsValid(), cTerminalModificationIdNewObject(), cTerminalModificationIdSet()
property length as %Integer (XMLNAME = "length", XMLPROJECTION = "ATTRIBUTE");
integer

Length of linear sequences of amino acids contained in the subunit.

Property methods: lengthDisplayToLogical(), lengthGet(), lengthIsValid(), lengthLogicalToDisplay(), lengthNormalize(), lengthSet(), lengthXSDToLogical()
property nTerminalModification as %String (MAXLEN = 1000000, XMLNAME = "nTerminalModification", XMLPROJECTION = "ATTRIBUTE");
string

The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.

Property methods: nTerminalModificationDisplayToLogical(), nTerminalModificationGet(), nTerminalModificationIsValid(), nTerminalModificationLogicalToDisplay(), nTerminalModificationLogicalToOdbc(), nTerminalModificationNormalize(), nTerminalModificationSet()
property nTerminalModificationId as HS.FHIR.DTL.vR4.Model.Datatype.Identifier (XMLNAME = "nTerminalModificationId", XMLPROJECTION = "ELEMENT");
Identifier

Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.

Property methods: nTerminalModificationIdGet(), nTerminalModificationIdGetSwizzled(), nTerminalModificationIdIsValid(), nTerminalModificationIdNewObject(), nTerminalModificationIdSet()
property sequence as %String (MAXLEN = 1000000, XMLNAME = "sequence", XMLPROJECTION = "ATTRIBUTE");
string

The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.

Property methods: sequenceDisplayToLogical(), sequenceGet(), sequenceIsValid(), sequenceLogicalToDisplay(), sequenceLogicalToOdbc(), sequenceNormalize(), sequenceSet()
property sequenceAttachment as HS.FHIR.DTL.vR4.Model.Datatype.Attachment (XMLNAME = "sequenceAttachment", XMLPROJECTION = "ELEMENT");
Attachment

The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.

Property methods: sequenceAttachmentGet(), sequenceAttachmentGetSwizzled(), sequenceAttachmentIsValid(), sequenceAttachmentNewObject(), sequenceAttachmentSet()
property subunit as %Integer (XMLNAME = "subunit", XMLPROJECTION = "ATTRIBUTE");
integer

Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

Property methods: subunitDisplayToLogical(), subunitGet(), subunitIsValid(), subunitLogicalToDisplay(), subunitNormalize(), subunitSet(), subunitXSDToLogical()

Inherited Members

Inherited Properties

Inherited Methods

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