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HS.FHIR.DTL.vSTU3.Model.Element.Sequence.variant

class HS.FHIR.DTL.vSTU3.Model.Element.Sequence.variant extends HS.FHIR.DTL.vSTU3.Model.Base.BackboneElement

Variant in sequence.

Property Inventory

Parameters

parameter ELEMENTQUALIFIED = 1;
Inherited description: ELEMENTQUALIFIED controls the format of exported XML. The ELEMENTQUALIFIED specification should be based on the elementFormDefault attribute of the schema that defines the type. To maintain compatibility, ELEMENTQUALIFIED will default to 1 (true) for literal format export and will default to 0 (false) for encoded or encoded12 format export. These were the values always previously assumed for the elementFormDefault attribute.

NOTE: Direct use of XMLExport method does not support the ELEMENTQUALIFIED. The export must be done using %XML.Writer or SOAP support.

parameter XMLNAME = Sequence.variant;
Inherited description: This parameter provides the default XMLNAME for the class. If it is empty then the class name will be used to construct a default XML name. The default XMLNAME is used as the top level tag when exporting objects and the export context did not provide an XML container name.
parameter XMLPROJECTION = ELEMENT;
parameter XMLSEQUENCE = 1;
Inherited description: If the XMLSEQUENCE = 1, then the order of the XML elements must match the order of the class properties. This allows us to deal with XML where the same field appears multiple times and is distinguished by the order.
parameter XMLTYPE = Sequence.variant;
Inherited description: This parameter provides the default XMLTYPE for the class. If it is empty then the class name will be used to construct a default XML type.

The default XMLTYPE is used when naming and referencing this type in a schema and the schema context did not provide an XML type name.

Properties

property cigar as %String (MAXLEN = 1000000, XMLNAME = "cigar", XMLPROJECTION = "ATTRIBUTE");
string

Extended CIGAR string for aligning the sequence with reference bases.

Property methods: cigarDisplayToLogical(), cigarGet(), cigarIsValid(), cigarLogicalToDisplay(), cigarLogicalToOdbc(), cigarNormalize(), cigarSet()
property end as %Integer (XMLNAME = "end", XMLPROJECTION = "ATTRIBUTE");
integer

End position of the variant on the reference sequence.

Property methods: endDisplayToLogical(), endGet(), endIsValid(), endLogicalToDisplay(), endNormalize(), endSet(), endXSDToLogical()
property observedAllele as %String (MAXLEN = 1000000, XMLNAME = "observedAllele", XMLPROJECTION = "ATTRIBUTE");
string

Allele that was observed.

Property methods: observedAlleleDisplayToLogical(), observedAlleleGet(), observedAlleleIsValid(), observedAlleleLogicalToDisplay(), observedAlleleLogicalToOdbc(), observedAlleleNormalize(), observedAlleleSet()
property referenceAllele as %String (MAXLEN = 1000000, XMLNAME = "referenceAllele", XMLPROJECTION = "ATTRIBUTE");
string

Allele in the reference sequence.

Property methods: referenceAlleleDisplayToLogical(), referenceAlleleGet(), referenceAlleleIsValid(), referenceAlleleLogicalToDisplay(), referenceAlleleLogicalToOdbc(), referenceAlleleNormalize(), referenceAlleleSet()
property start as %Integer (XMLNAME = "start", XMLPROJECTION = "ATTRIBUTE");
integer

Start position of the variant on the reference sequence.

Property methods: startDisplayToLogical(), startGet(), startIsValid(), startLogicalToDisplay(), startNormalize(), startSet(), startXSDToLogical()
property variantPointer as HS.FHIR.DTL.vSTU3.Model.Base.Reference (XMLNAME = "variantPointer", XMLPROJECTION = "ELEMENT");
Reference

Pointer to observed variant information.

Observation

Property methods: variantPointerGet(), variantPointerGetSwizzled(), variantPointerIsValid(), variantPointerNewObject(), variantPointerSet()

Inherited Members

Inherited Properties

Inherited Methods

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