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HS.FHIR.vSTU3.Model.Resource.Sequence.ReferenceSeq

deprecated class HS.FHIR.vSTU3.Model.Resource.Sequence.ReferenceSeq extends HS.FHIR.vSTU3.Model.Base.BackboneElement

THIS DATA OBJECT MODEL CLASS IS DEPRECATED - Use %DynamicObject or HS.FHIRObject.* instead.
Raw data describing a biological sequence.

Property Inventory

Method Inventory

Parameters

parameter ELEMENTQUALIFIED = 1;
Inherited description: ELEMENTQUALIFIED controls the format of exported XML. The ELEMENTQUALIFIED specification should be based on the elementFormDefault attribute of the schema that defines the type. To maintain compatibility, ELEMENTQUALIFIED will default to 1 (true) for literal format export and will default to 0 (false) for encoded or encoded12 format export. These were the values always previously assumed for the elementFormDefault attribute. NOTE: Direct use of XMLExport method does not support the ELEMENTQUALIFIED. The export must be done using %XML.Writer or SOAP support.
parameter JSONTYPEFIELD;
Inherited description: Type property name for JSON export.
parameter XMLNAME = Sequence.ReferenceSeq;
Inherited description: This parameter provides the default XMLNAME for the class. If it is empty then the class name will be used to construct a default XML name. The default XMLNAME is used as the top level tag when exporting objects and the export context did not provide an XML container name.
parameter XMLSEQUENCE = 1;
Inherited description: If the XMLSEQUENCE = 1, then the order of the XML elements must match the order of the class properties. This allows us to deal with XML where the same field appears multiple times and is distinguished by the order.
parameter XMLTYPE = Sequence.ReferenceSeq;
Inherited description: This parameter provides the default XMLTYPE for the class. If it is empty then the class name will be used to construct a default XML type. The default XMLTYPE is used when naming and referencing this type in a schema and the schema context did not provide an XML type name.

Properties

property chromosome as HS.FHIR.vSTU3.Model.Base.CodeableConcept (XMLNAME = "chromosome", XMLPROJECTION = "ELEMENT");
Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).
Property methods: chromosomeGet(), chromosomeGetSwizzled(), chromosomeIsValid(), chromosomeNewObject(), chromosomeSet()
property genomeBuild as HS.FHIR.vSTU3.Model.Datatype.String (XMLNAME = "genomeBuild", XMLPROJECTION = "ELEMENT");
The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
Property methods: genomeBuildGet(), genomeBuildGetSwizzled(), genomeBuildIsValid(), genomeBuildNewObject(), genomeBuildSet()
property referenceSeqId as HS.FHIR.vSTU3.Model.Base.CodeableConcept (XMLNAME = "referenceSeqId", XMLPROJECTION = "ELEMENT");
Reference identifier of reference sequence submitted to NCBI. It must match the type in the Sequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.
Property methods: referenceSeqIdGet(), referenceSeqIdGetSwizzled(), referenceSeqIdIsValid(), referenceSeqIdNewObject(), referenceSeqIdSet()
property referenceSeqPointer as HS.FHIR.vSTU3.Model.Base.Reference (XMLNAME = "referenceSeqPointer", XMLPROJECTION = "ELEMENT");
A Pointer to another Sequence entity as reference sequence.
Property methods: referenceSeqPointerGet(), referenceSeqPointerGetSwizzled(), referenceSeqPointerIsValid(), referenceSeqPointerNewObject(), referenceSeqPointerSet()
property referenceSeqString as HS.FHIR.vSTU3.Model.Datatype.String (XMLNAME = "referenceSeqString", XMLPROJECTION = "ELEMENT");
A string like "ACGT".
Property methods: referenceSeqStringGet(), referenceSeqStringGetSwizzled(), referenceSeqStringIsValid(), referenceSeqStringNewObject(), referenceSeqStringSet()
property strand as HS.FHIR.vSTU3.Model.Datatype.Integer (XMLNAME = "strand", XMLPROJECTION = "ELEMENT");
Directionality of DNA sequence. Available values are "1" for the plus strand (5' to 3')/Watson/Sense/positive and "-1" for the minus strand(3' to 5')/Crick/Antisense/negative.
Property methods: strandGet(), strandGetSwizzled(), strandIsValid(), strandNewObject(), strandSet()
property windowEnd as HS.FHIR.vSTU3.Model.Datatype.Integer (XMLNAME = "windowEnd", XMLPROJECTION = "ELEMENT") [ Required ];
End position of the window on the reference sequence. If the coordinate system is 0-based then end is is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
Property methods: windowEndGet(), windowEndGetSwizzled(), windowEndIsValid(), windowEndNewObject(), windowEndSet()
property windowStart as HS.FHIR.vSTU3.Model.Datatype.Integer (XMLNAME = "windowStart", XMLPROJECTION = "ELEMENT") [ Required ];
Start position of the window on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
Property methods: windowStartGet(), windowStartGetSwizzled(), windowStartIsValid(), windowStartNewObject(), windowStartSet()

Methods

deprecated method SetChromosome(pCode As %String = "", pDisplay As %String = "", pSystem As %String = "", pText As %String = "", pVersion As %String = "", pUserSelected As %String = "", pId As %String = "", pExtension As %RegisteredObject = "") as %Status
THIS DATA OBJECT MODEL CLASS IS DEPRECATED - Use %DynamicObject or HS.FHIRObject.* instead.
Set method for the "chromosome" property.
deprecated method SetGenomeBuild(pValue As %String = "", pExtension As %RegisteredObject = "", pId As %String = "") as %Status
THIS DATA OBJECT MODEL CLASS IS DEPRECATED - Use %DynamicObject or HS.FHIRObject.* instead.
Set method for the "genomeBuild" property.
deprecated method SetReferenceSeqId(pCode As %String = "", pDisplay As %String = "", pSystem As %String = "", pText As %String = "", pVersion As %String = "", pUserSelected As %String = "", pId As %String = "", pExtension As %RegisteredObject = "") as %Status
THIS DATA OBJECT MODEL CLASS IS DEPRECATED - Use %DynamicObject or HS.FHIRObject.* instead.
Set method for the "referenceSeqId" property.
deprecated method SetReferenceSeqPointer(pReference As %String = "", pDisplay As %String = "", pExtension As %RegisteredObject = "") as %Status
THIS DATA OBJECT MODEL CLASS IS DEPRECATED - Use %DynamicObject or HS.FHIRObject.* instead.
Set method for the "referenceSeqPointer" property.
deprecated method SetReferenceSeqString(pValue As %String = "", pExtension As %RegisteredObject = "", pId As %String = "") as %Status
THIS DATA OBJECT MODEL CLASS IS DEPRECATED - Use %DynamicObject or HS.FHIRObject.* instead.
Set method for the "referenceSeqString" property.
deprecated method SetStrand(pValue As %String = "", pExtension As %RegisteredObject = "", pId As %String = "") as %Status
THIS DATA OBJECT MODEL CLASS IS DEPRECATED - Use %DynamicObject or HS.FHIRObject.* instead.
Set method for the "strand" property.
deprecated method SetWindowEnd(pValue As %String = "", pExtension As %RegisteredObject = "", pId As %String = "") as %Status
THIS DATA OBJECT MODEL CLASS IS DEPRECATED - Use %DynamicObject or HS.FHIRObject.* instead.
Set method for the "windowEnd" property.
deprecated method SetWindowStart(pValue As %String = "", pExtension As %RegisteredObject = "", pId As %String = "") as %Status
THIS DATA OBJECT MODEL CLASS IS DEPRECATED - Use %DynamicObject or HS.FHIRObject.* instead.
Set method for the "windowStart" property.

Inherited Members

Inherited Properties

Inherited Methods

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