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HS.FHIRModel.R4.MolecularSequenceX.ReferenceSeq

class HS.FHIRModel.R4.MolecularSequenceX.ReferenceSeq extends HS.FHIRModel.FHIRClassSuper

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** MolecularSequenceX.ReferenceSeq generated class schema
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Raw data describing a biological sequence.

Property Inventory

Method Inventory

Parameters

parameter XMLTYPE = R4_MOLECULARSEQUENCEX_REFERENCESEQ;
Inherited description: This parameter provides the default XMLTYPE for the class. If it is empty then the class name will be used to construct a default XML type.

The default XMLTYPE is used when naming and referencing this type in a schema and the schema context did not provide an XML type name.

Properties

property _genomeBuild as HS.FHIRModel.R4.Element;
Extensions for genomeBuild
Property methods: _genomeBuildGet(), _genomeBuildGetSwizzled(), _genomeBuildIsValid(), _genomeBuildNewObject(), _genomeBuildSet()
property _orientation as HS.FHIRModel.R4.Element;
Extensions for orientation
Property methods: _orientationGet(), _orientationGetSwizzled(), _orientationIsValid(), _orientationNewObject(), _orientationSet()
property _referenceSeqString as HS.FHIRModel.R4.Element;
Extensions for referenceSeqString
Property methods: _referenceSeqStringGet(), _referenceSeqStringGetSwizzled(), _referenceSeqStringIsValid(), _referenceSeqStringNewObject(), _referenceSeqStringSet()
property _strand as HS.FHIRModel.R4.Element;
Extensions for strand
Property methods: _strandGet(), _strandGetSwizzled(), _strandIsValid(), _strandNewObject(), _strandSet()
property _windowEnd as HS.FHIRModel.R4.Element;
Extensions for windowEnd
Property methods: _windowEndGet(), _windowEndGetSwizzled(), _windowEndIsValid(), _windowEndNewObject(), _windowEndSet()
property _windowStart as HS.FHIRModel.R4.Element;
Extensions for windowStart
Property methods: _windowStartGet(), _windowStartGetSwizzled(), _windowStartIsValid(), _windowStartNewObject(), _windowStartSet()
property chromosome as HS.FHIRModel.R4.CodeableConcept;
Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).
Property methods: chromosomeGet(), chromosomeGetSwizzled(), chromosomeIsValid(), chromosomeNewObject(), chromosomeSet()
property extension as HS.FHIRModel.R4.SeqOfExtension;
May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
Property methods: extensionGet(), extensionGetSwizzled(), extensionIsValid(), extensionNewObject(), extensionSet()
property fhirID as %String;
Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
Property methods: fhirIDDisplayToLogical(), fhirIDGet(), fhirIDIsValid(), fhirIDLogicalToDisplay(), fhirIDLogicalToOdbc(), fhirIDNormalize(), fhirIDSet()
property genomeBuild as %String;
The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
Property methods: genomeBuildDisplayToLogical(), genomeBuildGet(), genomeBuildIsValid(), genomeBuildLogicalToDisplay(), genomeBuildLogicalToOdbc(), genomeBuildNormalize(), genomeBuildSet()
property modifierExtension as HS.FHIRModel.R4.SeqOfExtension;
May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
Property methods: modifierExtensionGet(), modifierExtensionGetSwizzled(), modifierExtensionIsValid(), modifierExtensionNewObject(), modifierExtensionSet()
property orientation as %String (VALUELIST = ",sense,antisense");
A relative reference to a DNA strand based on gene orientation. The strand that contains the open reading frame of the gene is the "sense" strand, and the opposite complementary strand is the "antisense" strand.
Property methods: orientationDisplayToLogical(), orientationGet(), orientationIsValid(), orientationLogicalToDisplay(), orientationLogicalToOdbc(), orientationNormalize(), orientationSet()
property referenceSeqId as HS.FHIRModel.R4.CodeableConcept;
Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.
Property methods: referenceSeqIdGet(), referenceSeqIdGetSwizzled(), referenceSeqIdIsValid(), referenceSeqIdNewObject(), referenceSeqIdSet()
property referenceSeqPointer as HS.FHIRModel.R4.Reference;
A pointer to another MolecularSequence entity as reference sequence.
Property methods: referenceSeqPointerGet(), referenceSeqPointerGetSwizzled(), referenceSeqPointerIsValid(), referenceSeqPointerNewObject(), referenceSeqPointerSet()
property referenceSeqString as %String;
A string like "ACGT".
Property methods: referenceSeqStringDisplayToLogical(), referenceSeqStringGet(), referenceSeqStringIsValid(), referenceSeqStringLogicalToDisplay(), referenceSeqStringLogicalToOdbc(), referenceSeqStringNormalize(), referenceSeqStringSet()
property strand as %String (VALUELIST = ",watson,crick");
An absolute reference to a strand. The Watson strand is the strand whose 5'-end is on the short arm of the chromosome, and the Crick strand as the one whose 5'-end is on the long arm.
Property methods: strandDisplayToLogical(), strandGet(), strandIsValid(), strandLogicalToDisplay(), strandLogicalToOdbc(), strandNormalize(), strandSet()
property windowEnd as %Integer;
End position of the window on the reference sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
Property methods: windowEndDisplayToLogical(), windowEndGet(), windowEndIsValid(), windowEndLogicalToDisplay(), windowEndNormalize(), windowEndSet(), windowEndXSDToLogical()
property windowStart as %Integer;
Start position of the window on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
Property methods: windowStartDisplayToLogical(), windowStartGet(), windowStartIsValid(), windowStartLogicalToDisplay(), windowStartNormalize(), windowStartSet(), windowStartXSDToLogical()

Methods

method IncludeChromosome()
method IncludeExtension()
method IncludeModifierExtension()
method IncludeReferenceSeqId()
method IncludeReferenceSeqPointer()
method _getProperties() as %DynamicArray
Inherited description: Return an array of the defined properties of this class in the definition order that they were discovered in the the HL7FHIR JSchema document
method toDao() as %DynamicAbstractObject
Inherited description: >

The toDao() method casts the set to a DAO.

Inherited Members

Inherited Methods

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