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For genetics orders

Property Inventory


parameter CANOVERRIDEPROPLIST = Variants;
This will be computed by the streamlet class
Inherited description: Must be filled in on descendent class
This will determine the order type of the order item


property Extension as HS.Local.SDA3.GenomicsOrderExtension;
Property methods: ExtensionGet(), ExtensionGetObject(), ExtensionGetObjectId(), ExtensionGetSwizzled(), ExtensionIsEmpty(), ExtensionIsValid(), ExtensionNewObject(), ExtensionSet(), ExtensionSetObject(), ExtensionSetObjectId(), ExtensionUnSwizzle()
property LinkedFillerID as %String (MAXLEN = 220);
Many genomics orders are associated with a lab order. If so, this will contain the filler ID of that lab order VIEWERLIB: Not stored
Property methods: LinkedFillerIDDisplayToLogical(), LinkedFillerIDGet(), LinkedFillerIDIsValid(), LinkedFillerIDLogicalToDisplay(), LinkedFillerIDLogicalToOdbc(), LinkedFillerIDNormalize(), LinkedFillerIDSet()
property VCFStreams as list of HS.SDA3.Blob;
A stream of VCF data - this can be very large VIEWERLIB: Not stored
Property methods: VCFStreamsBuildValueArray(), VCFStreamsCollectionToDisplay(), VCFStreamsCollectionToOdbc(), VCFStreamsDisplayToCollection(), VCFStreamsGet(), VCFStreamsGetObject(), VCFStreamsGetObjectId(), VCFStreamsGetSwizzled(), VCFStreamsIsValid(), VCFStreamsOdbcToCollection(), VCFStreamsSet(), VCFStreamsSetObject(), VCFStreamsSetObjectId()
property Variants as list of HS.SDA3.GenomicsVariant;
A filtered list of the clinically significant variant data parsed from the VCF streams We filter by "report,true" in the key value pairs stored in column 8 (INFO)
Property methods: VariantsBuildValueArray(), VariantsCollectionToDisplay(), VariantsCollectionToOdbc(), VariantsDisplayToCollection(), VariantsGet(), VariantsGetObject(), VariantsGetObjectId(), VariantsGetSwizzled(), VariantsIsValid(), VariantsOdbcToCollection(), VariantsSet(), VariantsSetObject(), VariantsSetObjectId()

Inherited Members

Inherited Properties

Inherited Methods

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